STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG87600.1Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (323 aa)    
Predicted Functional Partners:
SDG87625.1
Peptide/nickel transport system permease protein.
 
 0.990
SDG87653.1
Peptide/nickel transport system permease protein.
 
 
 0.977
SDH20618.1
Peptide/nickel transport system permease protein.
 
 0.965
SDH86865.1
Peptide/nickel transport system permease protein.
 
 0.963
SDG87540.1
Peptide/nickel transport system substrate-binding protein.
 
 
 0.959
SDJ04645.1
Peptide/nickel transport system permease protein.
 
 0.956
SDG87574.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 
0.952
SDH04544.1
Peptide/nickel transport system permease protein.
 
 0.950
SDH22868.1
Peptide/nickel transport system permease protein.
 
 0.938
SDI42019.1
Peptide/nickel transport system permease protein.
 
 0.932
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.