STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG89896.1Tripartite tricarboxylate transporter TctA family protein. (460 aa)    
Predicted Functional Partners:
SDG89929.1
Hypothetical protein.
       0.800
SDH51486.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
  
 
 0.794
SDI68907.1
Putative tricarboxylic transport membrane protein.
  
 
 0.794
SDH51534.1
Tripartite tricarboxylate transporter TctB family protein.
  
 
 0.722
SDI68878.1
Putative tricarboxylic transport membrane protein.
  
 
 0.722
SDG90103.1
3-hydroxy-3-methylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family.
 
     0.619
SDG89999.1
3-methylfumaryl-CoA hydratase.
 
     0.581
SDG89965.1
3-methylfumaryl-CoA hydratase.
 
     0.579
SDG90030.1
CoA:oxalate CoA-transferase; Belongs to the CoA-transferase III family.
  
    0.528
SDI39857.1
Imipenem/basic amino acid-specific outer membrane pore.
  
    0.400
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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