STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH06134.1Protein of unknown function. (52 aa)    
Predicted Functional Partners:
SDI34307.1
Cellobiose phosphorylase.
 
     0.532
SDH06169.1
Putative mRNA 3-end processing factor.
       0.522
SDH06209.1
DNA ligase-1.
       0.522
SDH06243.1
ATP-dependent helicase Lhr and Lhr-like helicase.
       0.522
SDH06282.1
Putative phosphoesterase.
       0.522
SDG82154.1
Bifunctional non-homologous end joining protein LigD.
 
     0.520
SDH06102.1
Shikimate dehydrogenase.
       0.443
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.