STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH21170.1RNA polymerase sigma-70 factor, ECF subfamily. (167 aa)    
Predicted Functional Partners:
SDH21143.1
FecR family protein.
 
  0.919
SDI92095.1
FecR family protein.
  
  0.800
SDH64761.1
FecR family protein.
 
 0.797
SDH87104.1
FecR family protein.
 
 0.794
SDI16352.1
FecR family protein.
  
  0.788
SDI84655.1
FecR family protein.
  
  0.788
SDI92840.1
FecR family protein.
  
  0.785
SDI80890.1
FecR family protein.
  
  0.780
SDH20495.1
FecR family protein.
  
  0.779
SDI46926.1
FecR family protein.
  
  0.779
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.