STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH17199.1Hypothetical protein. (368 aa)    
Predicted Functional Partners:
SDH22219.1
Hypothetical protein.
 
  
 0.905
SDH22265.1
3-oxoacyl-[acyl-carrier-protein] synthase-1.
 
  
 0.903
SDH17137.1
Type VI secretion system secreted protein VgrG.
 
  
 0.880
SDH22339.1
Conserved hypothetical protein.
 
  
 0.836
SDH17067.1
Type VI secretion system protein ImpH.
 
    0.830
SDH17030.1
Type VI secretion system protein ImpG.
 
    0.829
SDH17005.1
Type VI secretion system protein ImpF.
 
    0.823
SDH17232.1
Protein of unknown function.
 
     0.814
SDH22277.1
GHH signature containing HNH/Endo VII superfamily nuclease toxin 2.
 
    0.792
SDH16902.1
Type VI secretion system protein ImpC.
 
    0.787
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.