STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH33569.1GntR family transcriptional regulator, trehalose operon transcriptional repressor. (234 aa)    
Predicted Functional Partners:
SDH33604.1
PTS system, trehalose-specific IIC component.
 
  
 0.913
SDH33642.1
Trehalose-6-phosphate hydrolase.
 
  
 0.797
SDH33719.1
Phosphocarrier protein FPr.
 
  
 0.768
SDH88634.1
Transcriptional regulator, histidine utilization repressor, GntR family.
  
   
 0.655
SDH33758.1
Phosphotransferase system, EIIB.
 
  
 0.622
SDH97962.1
DNA-binding transcriptional regulator, GntR family.
  
   
 0.591
SDI47891.1
Beta-fructofuranosidase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
    0.524
SDI78287.1
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.519
SDH21896.1
AraC-type DNA-binding protein.
  
  
 0.511
SDH35994.1
AraC-type DNA-binding protein.
  
  
 0.511
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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