STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH56409.1Putative effector of murein hydrolase LrgA, UPF0299 family. (120 aa)    
Predicted Functional Partners:
SDH56376.1
TIGR00659 family protein.
 
  
 0.989
SDH56350.1
Hypothetical protein.
       0.800
SDH56445.1
Uncharacterized conserved protein.
     
 0.581
SDG98001.1
Amidohydrolase.
  
     0.577
SDH56481.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
       0.456
SDH93991.1
Hypothetical protein.
  
     0.443
SDI26893.1
Indolepyruvate ferredoxin oxidoreductase.
     
 0.442
SDI23447.1
Protein of unknown function.
  
     0.413
SDI57134.1
Hypothetical protein.
  
     0.413
SDH39571.1
Protein of unknown function.
  
     0.402
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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