STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH90347.1Hypothetical protein. (86 aa)    
Predicted Functional Partners:
SDI50888.1
polyphosphate:AMP phosphotransferase.
  
    0.842
SDG83450.1
Cytochrome c oxidase accessory protein FixG.
   
    0.838
SDG83423.1
Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
    0.828
SDG83298.1
Cytochrome c oxidase cbb3-type subunit 4.
   
    0.769
SDG83401.1
Cytochrome c oxidase cbb3-type subunit 4.
   
    0.769
SDI02778.1
Radical SAM superfamily enzyme YgiQ, UPF0313 family.
   
    0.634
SDI57253.1
Uncharacterized radical SAM protein YgiQ.
   
    0.601
SDI49885.1
Protein of unknown function.
   
    0.568
SDI09318.1
Outer membrane protein.
   
    0.555
SDG83247.1
Cytochrome c oxidase cbb3-type subunit 1; Belongs to the heme-copper respiratory oxidase family.
   
    0.543
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.