STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH84532.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (211 aa)    
Predicted Functional Partners:
SDH89433.1
PAS domain S-box-containing protein.
 
 0.990
SDG92217.1
Two-component system, NarL family, sensor histidine kinase BarA.
   
 0.983
SDI87798.1
Na+/proline symporter.
 
 0.939
SDI76088.1
Signal transduction histidine kinase.
  
 0.927
SDG80647.1
Hypothetical protein.
  
 0.925
SDH75164.1
PAS domain S-box-containing protein.
  
 0.925
SDI04216.1
Hypothetical protein.
  
 0.925
SDI34573.1
Response regulator receiver domain-containing protein.
  
 0.925
SDI18161.1
Signal transduction histidine kinase.
   
 0.904
SDH19305.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  
  0.833
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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