Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDH75712.1 | gcvP | SAMN05216588_10776 | SAMN05216588_109100 | Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.996 |
SDH75712.1 | purL | SAMN05216588_10776 | SAMN05216588_107214 | Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.402 |
SDH95119.1 | SDI61586.1 | SAMN05216588_10999 | SAMN05216588_12078 | Aminomethyltransferase. | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | 0.572 |
SDH95119.1 | SDI62055.1 | SAMN05216588_10999 | SAMN05216588_12094 | Aminomethyltransferase. | Aminomethyltransferase; Belongs to the GcvT family. | 0.715 |
SDH95119.1 | SDI62119.1 | SAMN05216588_10999 | SAMN05216588_12096 | Aminomethyltransferase. | Aminomethyltransferase; Belongs to the GcvT family. | 0.742 |
SDH95119.1 | SDI72755.1 | SAMN05216588_10999 | SAMN05216588_12322 | Aminomethyltransferase. | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | 0.558 |
SDH95119.1 | gcvH | SAMN05216588_10999 | SAMN05216588_106204 | Aminomethyltransferase. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.992 |
SDH95119.1 | gcvH-2 | SAMN05216588_10999 | SAMN05216588_109101 | Aminomethyltransferase. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.996 |
SDH95119.1 | gcvP | SAMN05216588_10999 | SAMN05216588_109100 | Aminomethyltransferase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.999 |
SDH95119.1 | gcvT | SAMN05216588_10999 | SAMN05216588_106203 | Aminomethyltransferase. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.749 |
SDH95119.1 | purL | SAMN05216588_10999 | SAMN05216588_107214 | Aminomethyltransferase. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.543 |
SDI61586.1 | SDH95119.1 | SAMN05216588_12078 | SAMN05216588_10999 | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | Aminomethyltransferase. | 0.572 |
SDI61586.1 | SDI62055.1 | SAMN05216588_12078 | SAMN05216588_12094 | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | Aminomethyltransferase; Belongs to the GcvT family. | 0.782 |
SDI61586.1 | SDI62119.1 | SAMN05216588_12078 | SAMN05216588_12096 | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | Aminomethyltransferase; Belongs to the GcvT family. | 0.571 |
SDI61586.1 | SDI72755.1 | SAMN05216588_12078 | SAMN05216588_12322 | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | 0.842 |
SDI61586.1 | gcvH | SAMN05216588_12078 | SAMN05216588_106204 | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.959 |
SDI61586.1 | gcvH-2 | SAMN05216588_12078 | SAMN05216588_109101 | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.959 |
SDI61586.1 | gcvP | SAMN05216588_12078 | SAMN05216588_109100 | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.993 |
SDI61586.1 | gcvT | SAMN05216588_12078 | SAMN05216588_106203 | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.539 |
SDI61586.1 | purL | SAMN05216588_12078 | SAMN05216588_107214 | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.697 |
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