STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH94226.1TRAP transporter, DctM subunit. (426 aa)    
Predicted Functional Partners:
SDH94250.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.992
SDH94274.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 
 0.936
SDI74422.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.929
SDI99107.1
C4-dicarboxylate-binding protein DctP.
 
 
 0.898
SDI74482.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 0.866
SDI33249.1
C4-dicarboxylate transporter, DctQ subunit.
  
 0.843
SDI99169.1
C4-dicarboxylate transporter, DctQ subunit.
  
 0.843
SDI21779.1
C4-dicarboxylate-binding protein DctP.
 
 
 0.839
SDI33275.1
C4-dicarboxylate-binding protein DctP.
 
 
 0.839
SDI98865.1
C4-dicarboxylate-binding protein DctP.
 
 
 0.838
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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