STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI02585.1Tat (twin-arginine translocation) pathway signal sequence. (307 aa)    
Predicted Functional Partners:
SDI16727.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.859
SDH69685.1
ATP:ADP antiporter, AAA family.
 
     0.732
SDH81105.1
ATP:ADP antiporter, AAA family.
 
     0.730
SDI23358.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 0.726
SDI03358.1
Predicted oxidoreductase.
 
 0.637
SDI00623.1
Sulfite reductase (NADPH) flavoprotein alpha-component.
     
 0.628
SDI42150.1
Predicted oxidoreductase.
 
0.608
SDH80284.1
Predicted oxidoreductase.
 
0.602
SDI89715.1
Predicted oxidoreductase.
 
0.601
SDH00453.1
Predicted oxidoreductase.
 
0.594
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.