STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI12746.1Serine protease DegS. (381 aa)    
Predicted Functional Partners:
SDI69164.1
sigma-E factor negative regulatory protein RseA.
  
 
 0.951
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.882
SDH68487.1
Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif.
   
 0.838
SDH00107.1
OmpA-OmpF porin, OOP family.
    
 
 0.755
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
 
 
 
 0.748
SDI23818.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.722
SDI16727.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.709
SDI78439.1
ATPase family associated with various cellular activities (AAA).
    
 0.696
SDJ06402.1
Coenzyme PQQ biosynthesis probable peptidase PqqF.
   
 
 0.675
SDI76088.1
Signal transduction histidine kinase.
  
  
 0.670
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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