STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI12962.1Threonine/homoserine/homoserine lactone efflux protein. (207 aa)    
Predicted Functional Partners:
SDI12929.1
Hypothetical protein.
       0.773
SDI88180.1
Threonine/homoserine/homoserine lactone efflux protein.
  
    0.753
SDG99663.1
Threonine/homoserine/homoserine lactone efflux protein.
  
     0.717
SDJ00247.1
Threonine/homoserine/homoserine lactone efflux protein.
  
     0.714
SDI91153.1
Homoserine/homoserine lactone efflux protein.
  
    0.708
SDH24607.1
Threonine/homoserine/homoserine lactone efflux protein.
  
    0.675
SDG89135.1
Threonine/homoserine/homoserine lactone efflux protein.
  
    0.621
SDI13004.1
L-ornithine N5-oxygenase.
       0.613
SDG87336.1
Threonine/homoserine/homoserine lactone efflux protein.
  
    0.580
SDI23243.1
Chemotaxis protein CheY-P-specific phosphatase CheC.
    
   0.557
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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