STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI10030.1Osmoprotectant transport system substrate-binding protein. (296 aa)    
Predicted Functional Partners:
SDI09993.1
Osmoprotectant transport system permease protein.
 
 0.999
SDI10060.1
Osmoprotectant transport system permease protein.
 
 0.999
SDI10084.1
Osmoprotectant transport system ATP-binding protein.
 
 0.998
SDH88502.1
Glycine betaine/proline transport system permease protein.
 
  
 0.922
SDI73611.1
Glycine betaine/proline transport system permease protein.
 
  
 0.872
SDI01609.1
CBS domain-containing membrane protein.
    
  0.683
SDG89692.1
Helix-turn-helix.
    
  0.653
SDI67107.1
Conserved hypothetical protein.
  
    0.646
SDJ00221.1
Conserved hypothetical protein.
  
    0.646
potA
Putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
    
  0.611
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.