STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI23043.1Uncharacterized membrane protein YkoI. (102 aa)    
Predicted Functional Partners:
SDH19608.1
TIGR00156 family protein.
  
    0.905
SDI22949.1
Signal transduction histidine kinase.
 
   
 0.898
SDI22978.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  
 0.842
SDI23012.1
Peptidase propeptide and YPEB domain-containing protein.
 
    
0.832
SDI12512.1
Phospholipid transport system substrate-binding protein.
  
   0.769
SDI44610.1
Uncharacterized lipoprotein.
  
     0.717
SDG89692.1
Helix-turn-helix.
  
     0.697
SDI89678.1
Glycerol-3-phosphate dehydrogenase.
 
     0.697
SDH20355.1
Protein of unknown function.
  
    0.641
SDI03163.1
Hypothetical protein.
  
    0.641
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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