STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI49787.1PilZ domain-containing protein. (99 aa)    
Predicted Functional Partners:
SDH64819.1
Adenylate cyclase, class 1.
  
     0.742
SDG84102.1
PilZ domain-containing protein.
  
   
 0.732
SDH96379.1
Hypothetical protein.
  
     0.717
SDI68990.1
HD-like signal output (HDOD) domain, no enzymatic activity.
  
     0.710
SDI52621.1
Purine-binding chemotaxis protein CheW.
  
     0.709
SDH96409.1
Phage shock protein A (PspA) family protein.
  
     0.697
SDH42823.1
Histidine kinase-like ATPase domain-containing protein.
 
   
 0.688
SDH89460.1
Protein of unknown function.
  
     0.677
SDI49756.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
     0.672
SDI65573.1
HD-like signal output (HDOD) domain, no enzymatic activity.
  
     0.671
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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