Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDI17492.1 | SDI52288.1 | SAMN05216588_11281 | SAMN05216588_11893 | Thioredoxin 1. | Cytochrome c-type biogenesis protein CcmF. | 0.596 |
SDI17492.1 | ccmC | SAMN05216588_11281 | SAMN05216588_11896 | Thioredoxin 1. | Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.578 |
SDI52123.1 | SDI52163.1 | SAMN05216588_11889 | SAMN05216588_11890 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmH. | 0.800 |
SDI52123.1 | SDI52209.1 | SAMN05216588_11889 | SAMN05216588_11891 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmH; Possible subunit of a heme lyase. | 0.800 |
SDI52123.1 | SDI52248.1 | SAMN05216588_11889 | SAMN05216588_11892 | Hypothetical protein. | Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE. | 0.800 |
SDI52123.1 | SDI52288.1 | SAMN05216588_11889 | SAMN05216588_11893 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmF. | 0.800 |
SDI52123.1 | SDI52351.1 | SAMN05216588_11889 | SAMN05216588_11895 | Hypothetical protein. | Heme exporter protein D; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. | 0.800 |
SDI52123.1 | SDI52421.1 | SAMN05216588_11889 | SAMN05216588_11897 | Hypothetical protein. | Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.660 |
SDI52123.1 | ccmA | SAMN05216588_11889 | SAMN05216588_11898 | Hypothetical protein. | Heme exporter protein A; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.653 |
SDI52123.1 | ccmC | SAMN05216588_11889 | SAMN05216588_11896 | Hypothetical protein. | Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.800 |
SDI52123.1 | ccmE | SAMN05216588_11889 | SAMN05216588_11894 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.800 |
SDI52163.1 | SDI52123.1 | SAMN05216588_11890 | SAMN05216588_11889 | Cytochrome c-type biogenesis protein CcmH. | Hypothetical protein. | 0.800 |
SDI52163.1 | SDI52209.1 | SAMN05216588_11890 | SAMN05216588_11891 | Cytochrome c-type biogenesis protein CcmH. | Cytochrome c-type biogenesis protein CcmH; Possible subunit of a heme lyase. | 0.983 |
SDI52163.1 | SDI52248.1 | SAMN05216588_11890 | SAMN05216588_11892 | Cytochrome c-type biogenesis protein CcmH. | Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE. | 0.984 |
SDI52163.1 | SDI52288.1 | SAMN05216588_11890 | SAMN05216588_11893 | Cytochrome c-type biogenesis protein CcmH. | Cytochrome c-type biogenesis protein CcmF. | 0.995 |
SDI52163.1 | SDI52351.1 | SAMN05216588_11890 | SAMN05216588_11895 | Cytochrome c-type biogenesis protein CcmH. | Heme exporter protein D; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. | 0.911 |
SDI52163.1 | SDI52421.1 | SAMN05216588_11890 | SAMN05216588_11897 | Cytochrome c-type biogenesis protein CcmH. | Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.926 |
SDI52163.1 | ccmA | SAMN05216588_11890 | SAMN05216588_11898 | Cytochrome c-type biogenesis protein CcmH. | Heme exporter protein A; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.924 |
SDI52163.1 | ccmC | SAMN05216588_11890 | SAMN05216588_11896 | Cytochrome c-type biogenesis protein CcmH. | Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.959 |
SDI52163.1 | ccmE | SAMN05216588_11890 | SAMN05216588_11894 | Cytochrome c-type biogenesis protein CcmH. | Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.964 |
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