STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI62092.1Trimethylamine monooxygenase. (456 aa)    
Predicted Functional Partners:
SDI62055.1
Aminomethyltransferase; Belongs to the GcvT family.
 
  
 0.953
SDI65024.1
Ca2+-binding protein, EF-hand superfamily.
    
 
 0.893
SDI62153.1
Protein of unknown function.
 
     0.873
SDI62119.1
Aminomethyltransferase; Belongs to the GcvT family.
 
    0.872
SDI62222.1
Hypothetical protein.
 
     0.870
atpA
F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
   
   0.836
SDI62188.1
Ferredoxin-NADP reductase.
 
   
 0.813
SDI16727.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.796
SDH38811.1
2,4-dienoyl-CoA reductase (NADPH2).
    
 0.768
SDI61812.1
N-methylglutamate synthase subunit B.
 
     0.766
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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