STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI65143.1Polar amino acid transport system substrate-binding protein. (281 aa)    
Predicted Functional Partners:
SDI65174.1
Polar amino acid transport system permease protein.
 
  0.963
SDI65196.1
Polar amino acid transport system permease protein.
 
  0.961
SDI65231.1
Polar amino acid transport system ATP-binding protein.
 
  
  0.929
SDJ00053.1
Arginine/ornithine transport system permease protein.
 
 0.861
SDH32616.1
Polar amino acid transport system permease protein.
  
  0.851
SDJ00080.1
Arginine/ornithine transport system permease protein.
 
 
 0.847
SDH32579.1
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.
  
  0.843
SDH03772.1
Cystine transport system permease protein.
 
  0.838
SDI59534.1
Polar amino acid transport system permease protein.
 
  0.819
SDH07571.1
Amino acid ABC transporter membrane protein 1, PAAT family.
 
  0.816
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.