STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI65889.1AraC-type DNA-binding protein. (367 aa)    
Predicted Functional Partners:
SDI65862.1
Aldoxime dehydratase.
 
     0.757
SDH65992.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.717
SDI65830.1
Putative MetA-pathway of phenol degradation.
 
     0.700
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.608
SDH08951.1
Siderophore synthetase component.
  
   
 0.596
SDH77433.1
Transcriptional regulator with AbiEi antitoxin N-terminal domain.
  
     0.581
SDH77459.1
Hypothetical protein.
  
     0.528
SDH33338.1
Restriction system protein.
  
    0.526
SDH26389.1
Hypothetical protein.
  
     0.515
SDI21555.1
Uncharacterized conserved protein.
  
     0.484
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.