Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDG91606.1 | SDH86682.1 | SAMN05216588_101405 | SAMN05216588_10887 | Pilus assembly protein FimV. | Type IV pilus assembly protein PilW. | 0.546 |
SDG91606.1 | SDI22340.1 | SAMN05216588_101405 | SAMN05216588_11357 | Pilus assembly protein FimV. | Hypothetical protein. | 0.558 |
SDG91606.1 | SDI24112.1 | SAMN05216588_101405 | SAMN05216588_113116 | Pilus assembly protein FimV. | Hypothetical protein. | 0.729 |
SDG91606.1 | SDI78066.1 | SAMN05216588_101405 | SAMN05216588_12473 | Pilus assembly protein FimV. | Protein of unknown function. | 0.646 |
SDG91606.1 | SDI78126.1 | SAMN05216588_101405 | SAMN05216588_12475 | Pilus assembly protein FimV. | AmpE protein. | 0.529 |
SDG91606.1 | SDI94109.1 | SAMN05216588_101405 | SAMN05216588_1307 | Pilus assembly protein FimV. | Chemosensory pili system protein ChpC. | 0.693 |
SDG91606.1 | SDI94173.1 | SAMN05216588_101405 | SAMN05216588_1309 | Pilus assembly protein FimV. | Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator). | 0.789 |
SDH42645.1 | SDI24112.1 | SAMN05216588_104329 | SAMN05216588_113116 | Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | Hypothetical protein. | 0.611 |
SDH42645.1 | SDI78066.1 | SAMN05216588_104329 | SAMN05216588_12473 | Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | Protein of unknown function. | 0.635 |
SDH42645.1 | SDI94173.1 | SAMN05216588_104329 | SAMN05216588_1309 | Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator). | 0.921 |
SDH86682.1 | SDG91606.1 | SAMN05216588_10887 | SAMN05216588_101405 | Type IV pilus assembly protein PilW. | Pilus assembly protein FimV. | 0.546 |
SDH86682.1 | SDI78066.1 | SAMN05216588_10887 | SAMN05216588_12473 | Type IV pilus assembly protein PilW. | Protein of unknown function. | 0.631 |
SDI22340.1 | SDG91606.1 | SAMN05216588_11357 | SAMN05216588_101405 | Hypothetical protein. | Pilus assembly protein FimV. | 0.558 |
SDI22340.1 | SDI24112.1 | SAMN05216588_11357 | SAMN05216588_113116 | Hypothetical protein. | Hypothetical protein. | 0.417 |
SDI22340.1 | SDI78066.1 | SAMN05216588_11357 | SAMN05216588_12473 | Hypothetical protein. | Protein of unknown function. | 0.635 |
SDI22340.1 | SDI94109.1 | SAMN05216588_11357 | SAMN05216588_1307 | Hypothetical protein. | Chemosensory pili system protein ChpC. | 0.642 |
SDI24112.1 | SDG91606.1 | SAMN05216588_113116 | SAMN05216588_101405 | Hypothetical protein. | Pilus assembly protein FimV. | 0.729 |
SDI24112.1 | SDH42645.1 | SAMN05216588_113116 | SAMN05216588_104329 | Hypothetical protein. | Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.611 |
SDI24112.1 | SDI22340.1 | SAMN05216588_113116 | SAMN05216588_11357 | Hypothetical protein. | Hypothetical protein. | 0.417 |
SDI24112.1 | SDI78066.1 | SAMN05216588_113116 | SAMN05216588_12473 | Hypothetical protein. | Protein of unknown function. | 0.685 |
page 1 of 3