Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDG83584.1 | SDH33838.1 | SAMN05216588_101127 | SAMN05216588_10480 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Oxygen-independent coproporphyrinogen-3 oxidase. | 0.530 |
SDG83584.1 | SDI78516.1 | SAMN05216588_101127 | SAMN05216588_12488 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Putative membrane protein. | 0.699 |
SDG83584.1 | SDI94966.1 | SAMN05216588_101127 | SAMN05216588_13036 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Oxygen-independent coproporphyrinogen-3 oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.638 |
SDG83584.1 | hemF | SAMN05216588_101127 | SAMN05216588_103373 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. | 0.736 |
SDG83584.1 | hemH | SAMN05216588_101127 | SAMN05216588_10924 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.437 |
SDH23327.1 | SDH23360.1 | SAMN05216588_103272 | SAMN05216588_103273 | Magnesium chelatase subunit ChlD-like protein. | Magnesium chelatase subunit I. | 0.999 |
SDH23327.1 | SDH23452.1 | SAMN05216588_103272 | SAMN05216588_103278 | Magnesium chelatase subunit ChlD-like protein. | Cobaltochelatase CobN. | 0.946 |
SDH23327.1 | SDI78516.1 | SAMN05216588_103272 | SAMN05216588_12488 | Magnesium chelatase subunit ChlD-like protein. | Putative membrane protein. | 0.657 |
SDH23327.1 | hemH | SAMN05216588_103272 | SAMN05216588_10924 | Magnesium chelatase subunit ChlD-like protein. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.709 |
SDH23360.1 | SDH23327.1 | SAMN05216588_103273 | SAMN05216588_103272 | Magnesium chelatase subunit I. | Magnesium chelatase subunit ChlD-like protein. | 0.999 |
SDH23360.1 | SDH23452.1 | SAMN05216588_103273 | SAMN05216588_103278 | Magnesium chelatase subunit I. | Cobaltochelatase CobN. | 0.980 |
SDH23360.1 | SDH39542.1 | SAMN05216588_103273 | SAMN05216588_104242 | Magnesium chelatase subunit I. | Ca-activated chloride channel family protein. | 0.978 |
SDH23360.1 | SDI78516.1 | SAMN05216588_103273 | SAMN05216588_12488 | Magnesium chelatase subunit I. | Putative membrane protein. | 0.705 |
SDH23360.1 | hemH | SAMN05216588_103273 | SAMN05216588_10924 | Magnesium chelatase subunit I. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.744 |
SDH23452.1 | SDH23327.1 | SAMN05216588_103278 | SAMN05216588_103272 | Cobaltochelatase CobN. | Magnesium chelatase subunit ChlD-like protein. | 0.946 |
SDH23452.1 | SDH23360.1 | SAMN05216588_103278 | SAMN05216588_103273 | Cobaltochelatase CobN. | Magnesium chelatase subunit I. | 0.980 |
SDH23452.1 | SDH39542.1 | SAMN05216588_103278 | SAMN05216588_104242 | Cobaltochelatase CobN. | Ca-activated chloride channel family protein. | 0.757 |
SDH23452.1 | SDI78516.1 | SAMN05216588_103278 | SAMN05216588_12488 | Cobaltochelatase CobN. | Putative membrane protein. | 0.709 |
SDH23452.1 | hemH | SAMN05216588_103278 | SAMN05216588_10924 | Cobaltochelatase CobN. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.757 |
SDH33838.1 | SDG83584.1 | SAMN05216588_10480 | SAMN05216588_101127 | Oxygen-independent coproporphyrinogen-3 oxidase. | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.530 |
page 1 of 3