STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI78542.1Hypothetical protein. (216 aa)    
Predicted Functional Partners:
SDI78570.1
Protein CcmA, bactofilin family.
 
    0.917
SDH53534.1
Peptidase family M23.
  
     0.607
SDI94109.1
Chemosensory pili system protein ChpC.
  
     0.595
erpA
Iron-sulfur cluster insertion apoprotein erpA; Required for insertion of 4Fe-4S clusters for at least IspG.
  
    0.591
SDH67929.1
Flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.514
SDI24112.1
Hypothetical protein.
  
     0.503
SDI78516.1
Putative membrane protein.
       0.500
SDI78499.1
Nitronate monooxygenase.
       0.471
SDI07384.1
Sporulation related domain-containing protein.
  
     0.466
SDH36554.1
Hypothetical protein.
  
     0.460
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.