STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI81539.1Purine-cytosine permease; Belongs to the purine-cytosine permease (2.A.39) family. (499 aa)    
Predicted Functional Partners:
SDI81568.1
solute:Na+ symporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.935
SDI81493.1
Ketosteroid isomerase homolog.
 
    0.909
SDI81600.1
Acetolactate synthase-1/2/3 large subunit; Belongs to the TPP enzyme family.
  
    0.813
SDI81454.1
Guanidinobutyrase; Belongs to the arginase family.
    0.755
SDG89727.1
TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor.
  
     0.653
SDG92217.1
Two-component system, NarL family, sensor histidine kinase BarA.
    
  0.631
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.560
SDJ02573.1
Hypothetical protein.
  
     0.549
SDJ02633.1
Hypothetical protein.
  
     0.540
SDJ03583.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.531
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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