STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI99956.1EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant). (515 aa)    
Predicted Functional Partners:
SDI45074.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.965
SDH63542.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.949
SDH95360.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
  0.914
SDI23215.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
  0.904
SDH07309.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
  0.874
SDH96690.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.869
SDH09486.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.868
SDI57222.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.861
SDI96917.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
  0.857
SDH16316.1
Diguanylate cyclase.
  
 
 0.856
Your Current Organism:
Pseudomonas flavescens
NCBI taxonomy Id: 29435
Other names: ATCC 51555, CCUG 49622, CFBP 5586, CIP 104204, DSM 12071, JCM 21586, LMG 18387, LMG:18387, NBRC 103044, NCPPB 3063, P. flavescens, strain B62
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