STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIU43347.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (626 aa)    
Predicted Functional Partners:
KIU43348.1
XapX domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.947
KIU43346.1
DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.935
KIU43616.1
Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.926
KIU43344.1
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.827
KIU48700.1
Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.781
KIU48699.1
XapX domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.775
KIU43343.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.734
KIU43345.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.672
KIU43349.1
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.558
KIU48697.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.489
Your Current Organism:
Bradyrhizobium elkanii
NCBI taxonomy Id: 29448
Other names: ATCC 49852, B. elkanii, Bradyrhizobium sp. AK1, Bradyrhizobium sp. AK3, Bradyrhizobium sp. URO14, Bradyrhizobium sp. URO7, Bradyrhizobium sp. mas1, Bradyrhizobium sp. mas10, Bradyrhizobium sp. mas11, Bradyrhizobium sp. mas12, Bradyrhizobium sp. mas17, Bradyrhizobium sp. mas18, Bradyrhizobium sp. mas19, Bradyrhizobium sp. mas20, Bradyrhizobium sp. mas21, Bradyrhizobium sp. mas22, Bradyrhizobium sp. mas23, Bradyrhizobium sp. mas25, Bradyrhizobium sp. mas26, Bradyrhizobium sp. mas27, Bradyrhizobium sp. mas29, Bradyrhizobium sp. mas30, Bradyrhizobium sp. mas31, Bradyrhizobium sp. mas40, Bradyrhizobium sp. mas42, Bradyrhizobium sp. mas6, Bradyrhizobium sp. mas7, Bradyrhizobium sp. mas8, Bradyrhizobium sp. mas9, DSM 11554, IFO 14791, LMG 6134, LMG:6134, NBRC 14791, USDA 76
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