STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002005185_01301Unannotated protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (163 aa)    
Predicted Functional Partners:
GCA_002005185_01302
Unannotated protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.762
GCA_002005185_01303
Unannotated protein.
       0.691
GCA_002005185_01304
Unannotated protein.
       0.654
GCA_002005185_01300
Unannotated protein.
       0.551
GCA_002005185_01298
Unannotated protein; Belongs to the thiolase-like superfamily. Thiolase family.
       0.492
GCA_002005185_01299
Unannotated protein.
       0.492
GCA_002005185_01306
Unannotated protein; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.471
DWV36_07565
Unannotated protein.
       0.459
GCA_002005185_01492
Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
   
 0.412
metG
Unannotated protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.410
Your Current Organism:
Veillonella parvula
NCBI taxonomy Id: 29466
Other names: ATCC 10790, ATCC 17745 [[Veillonella alcalescens]], CCUG 5123, DSM 2008, JCM 12972, Micrococcus gazogenes, Micrococcus gazogenes alcalescens anaerobius, Micrococcus lactilyticus, NCTC 11810, Staphylococcus parvulus, V. parvula, Veillonella alcalescens, Veillonella gazogenes
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.