STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YLM1_0206Cobalamin biosynthesis protein CbiM. (208 aa)    
Predicted Functional Partners:
YLM1_0208
Cobalt ABC transporter permease protein CbiQ.
 
 0.996
YLM1_0207
Cobalt transport protein CbiN.
  
 
 0.995
YLM1_0143
Cobalt ABC transporter, permease protein CbiQ.
 
 0.992
ecfA
Cobalt ABC transporter ATP-binding protein CbiO; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 0.982
YLM1_0613
Cobalt ABC transporter ATP-binding protein CbiO; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
 0.981
YLM1_0239
Precorrin-6x reductase CbiJ.
  
  
 0.940
cbiT
precorrin-6Y C5,15-methyltransferase (decarboxylating) CbiET; Catalyzes the methylation of C-15 in cobalt-precorrin-6B followed by the decarboxylation of C-12 to form cobalt-precorrin-7.
  
  
 0.940
cbiN
Cobalt transport protein CbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.
 
 
 0.937
YLM1_1670
Cobalamin biosynthesis protein CbiM.
  
  
 
0.913
cbiM
Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.
  
  
 
0.912
Your Current Organism:
Methanobrevibacter olleyae
NCBI taxonomy Id: 294671
Other names: DSM 16632, M. olleyae, Methanobrevibacter olleyae Rea et al. 2007, Methanobrevibacter sp. KM1H5-1P, OCM 841, strain KM1H5-1P
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