STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YLM1_1790Adhesin-like protein. (1513 aa)    
Predicted Functional Partners:
YLM1_0606
Adhesin-like protein.
       0.750
YLM1_1771
Phage tail tape measure protein.
  
     0.731
YLM1_1667
Formylmethanofuran dehydrogenase subunit E metal-binding domain-containing protein.
  
     0.709
YLM1_1668
Formylmethanofuran dehydrogenase subunit E metal-binding domain-containing protein.
  
     0.709
YLM1_0503
Hypothetical protein.
  
     0.699
YLM1_0695
CRISPR-associated RAMP protein Csm5 family.
  
     0.673
YLM1_0502
Hypothetical protein.
  
     0.640
YLM1_1209
Transposase.
  
     0.639
YLM1_0692
CRISPR-associated protein Csm2 family.
  
     0.638
YLM1_1714
Thymidylate synthase ThyA.
  
     0.635
Your Current Organism:
Methanobrevibacter olleyae
NCBI taxonomy Id: 294671
Other names: DSM 16632, M. olleyae, Methanobrevibacter olleyae Rea et al. 2007, Methanobrevibacter sp. KM1H5-1P, OCM 841, strain KM1H5-1P
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