GFC30_960 protein (Anoxybacillus amylolyticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GFC30_960

[GEPR] COG0477 Permeases of the major facilitator superfamily. (405 aa)

Predicted Functional Partners:

azr

0.821

ANB61907.1

0.679

GFC30_957

0.556

ANB59839.1

0.531

GFC30_768

0.531

GFC30_958

0.515

ANB61088.1

0.506

GFC30_894

0.450

ANB61332.1

0.418

Your Current Organism:

Anoxybacillus amylolyticus

NCBI taxonomy Id: 294699
Other names: A. amylolyticus, ATCC BAA-872, Anoxybacillus amylolyticus Poli et al. 2006, CIP 108338, DSM 15939, strain MR3C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANB59839.1	ANB61332.1	GFC30_2825	GFC30_2306	acrB/AcrD/AcrF family protein; [V] COG0841 Cation/multidrug efflux pump.	Sensory box protein; [T] COG2202 FOG: PAS/PAC domain.	0.501
ANB59839.1	ANB61907.1	GFC30_2825	GFC30_1901	acrB/AcrD/AcrF family protein; [V] COG0841 Cation/multidrug efflux pump.	hlyD secretion family protein; [V] COG1566 Multidrug resistance efflux pump.	0.746
ANB59839.1	GFC30_960	GFC30_2825	GFC30_960	acrB/AcrD/AcrF family protein; [V] COG0841 Cation/multidrug efflux pump.	[GEPR] COG0477 Permeases of the major facilitator superfamily.	0.531
ANB61088.1	GFC30_960	GFC30_1883	GFC30_960	[GEPR] COG0477 Permeases of the major facilitator superfamily.	[GEPR] COG0477 Permeases of the major facilitator superfamily.	0.506
ANB61332.1	ANB59839.1	GFC30_2306	GFC30_2825	Sensory box protein; [T] COG2202 FOG: PAS/PAC domain.	acrB/AcrD/AcrF family protein; [V] COG0841 Cation/multidrug efflux pump.	0.501
ANB61332.1	ANB61907.1	GFC30_2306	GFC30_1901	Sensory box protein; [T] COG2202 FOG: PAS/PAC domain.	hlyD secretion family protein; [V] COG1566 Multidrug resistance efflux pump.	0.609
ANB61332.1	GFC30_768	GFC30_2306	GFC30_768	Sensory box protein; [T] COG2202 FOG: PAS/PAC domain.	acrB/AcrD/AcrF family protein; [V] COG0841 Cation/multidrug efflux pump.	0.501
ANB61332.1	GFC30_894	GFC30_2306	GFC30_894	Sensory box protein; [T] COG2202 FOG: PAS/PAC domain.	Glutamine amidotransferases class-II family protein; [E] COG0069 Glutamate synthase domain 2.	0.667
ANB61332.1	GFC30_957	GFC30_2306	GFC30_957	Sensory box protein; [T] COG2202 FOG: PAS/PAC domain.	[T] COG2203 FOG: GAF domain.	0.777
ANB61332.1	GFC30_958	GFC30_2306	GFC30_958	Sensory box protein; [T] COG2202 FOG: PAS/PAC domain.	Bacterial regulatory s, luxR family protein; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	0.882
ANB61332.1	GFC30_960	GFC30_2306	GFC30_960	Sensory box protein; [T] COG2202 FOG: PAS/PAC domain.	[GEPR] COG0477 Permeases of the major facilitator superfamily.	0.418
ANB61907.1	ANB59839.1	GFC30_1901	GFC30_2825	hlyD secretion family protein; [V] COG1566 Multidrug resistance efflux pump.	acrB/AcrD/AcrF family protein; [V] COG0841 Cation/multidrug efflux pump.	0.746
ANB61907.1	ANB61332.1	GFC30_1901	GFC30_2306	hlyD secretion family protein; [V] COG1566 Multidrug resistance efflux pump.	Sensory box protein; [T] COG2202 FOG: PAS/PAC domain.	0.609
ANB61907.1	GFC30_768	GFC30_1901	GFC30_768	hlyD secretion family protein; [V] COG1566 Multidrug resistance efflux pump.	acrB/AcrD/AcrF family protein; [V] COG0841 Cation/multidrug efflux pump.	0.746
ANB61907.1	GFC30_960	GFC30_1901	GFC30_960	hlyD secretion family protein; [V] COG1566 Multidrug resistance efflux pump.	[GEPR] COG0477 Permeases of the major facilitator superfamily.	0.679
GFC30_768	ANB61332.1	GFC30_768	GFC30_2306	acrB/AcrD/AcrF family protein; [V] COG0841 Cation/multidrug efflux pump.	Sensory box protein; [T] COG2202 FOG: PAS/PAC domain.	0.501
GFC30_768	ANB61907.1	GFC30_768	GFC30_1901	acrB/AcrD/AcrF family protein; [V] COG0841 Cation/multidrug efflux pump.	hlyD secretion family protein; [V] COG1566 Multidrug resistance efflux pump.	0.746
GFC30_768	GFC30_960	GFC30_768	GFC30_960	acrB/AcrD/AcrF family protein; [V] COG0841 Cation/multidrug efflux pump.	[GEPR] COG0477 Permeases of the major facilitator superfamily.	0.531
GFC30_894	ANB61332.1	GFC30_894	GFC30_2306	Glutamine amidotransferases class-II family protein; [E] COG0069 Glutamate synthase domain 2.	Sensory box protein; [T] COG2202 FOG: PAS/PAC domain.	0.667
GFC30_894	GFC30_960	GFC30_894	GFC30_960	Glutamine amidotransferases class-II family protein; [E] COG0069 Glutamate synthase domain 2.	[GEPR] COG0477 Permeases of the major facilitator superfamily.	0.450