Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| IPI3 | PGUG_04793 | A5DNK9 | A5DNE2 | Pre-rRNA-processing protein IPI3; Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA. | Ribosomal_L30 domain-containing protein. | 0.852 |
| IPI3 | PGUG_05501 | A5DNK9 | A5DQF0 | Pre-rRNA-processing protein IPI3; Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA. | Brix domain-containing protein. | 0.408 |
| IPI3 | SPB4 | A5DNK9 | A5DGM4 | Pre-rRNA-processing protein IPI3; Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA. | ATP-dependent rRNA helicase SPB4; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits. Binds 90S pre-ribosomal particles and dissociates from pre-60S ribosomal particles after processing of 27SB pre-rRNA. Required for the normal formation of 18S rRNA through the processing of pre-rRNAs at sites A0, A1 and A2, and the normal formation of 25S and 5.8S rRNAs through the processing of pre-rRNAs at sites C1 and C2. | 0.537 |
| IPI3 | STS1 | A5DNK9 | A5DEJ2 | Pre-rRNA-processing protein IPI3; Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA. | Tethering factor for nuclear proteasome STS1; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins (By similarity). | 0.559 |
| PAN3 | STS1 | A5DCP8 | A5DEJ2 | PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] | Tethering factor for nuclear proteasome STS1; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins (By similarity). | 0.799 |
| PGUG_01059 | STS1 | A5DCQ4 | A5DEJ2 | MPN domain-containing protein. | Tethering factor for nuclear proteasome STS1; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins (By similarity). | 0.480 |
| PGUG_01184 | PGUG_04793 | A5DD29 | A5DNE2 | Fcf2 domain-containing protein. | Ribosomal_L30 domain-containing protein. | 0.563 |
| PGUG_01184 | PGUG_05501 | A5DD29 | A5DQF0 | Fcf2 domain-containing protein. | Brix domain-containing protein. | 0.487 |
| PGUG_01184 | STS1 | A5DD29 | A5DEJ2 | Fcf2 domain-containing protein. | Tethering factor for nuclear proteasome STS1; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins (By similarity). | 0.493 |
| PGUG_03320 | STS1 | A5DJ69 | A5DEJ2 | Uncharacterized protein. | Tethering factor for nuclear proteasome STS1; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins (By similarity). | 0.528 |
| PGUG_03529 | STS1 | A5DJS8 | A5DEJ2 | Histone H3. | Tethering factor for nuclear proteasome STS1; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins (By similarity). | 0.652 |
| PGUG_04793 | IPI3 | A5DNE2 | A5DNK9 | Ribosomal_L30 domain-containing protein. | Pre-rRNA-processing protein IPI3; Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA. | 0.852 |
| PGUG_04793 | PGUG_01184 | A5DNE2 | A5DD29 | Ribosomal_L30 domain-containing protein. | Fcf2 domain-containing protein. | 0.563 |
| PGUG_04793 | PGUG_05501 | A5DNE2 | A5DQF0 | Ribosomal_L30 domain-containing protein. | Brix domain-containing protein. | 0.873 |
| PGUG_04793 | SPB4 | A5DNE2 | A5DGM4 | Ribosomal_L30 domain-containing protein. | ATP-dependent rRNA helicase SPB4; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits. Binds 90S pre-ribosomal particles and dissociates from pre-60S ribosomal particles after processing of 27SB pre-rRNA. Required for the normal formation of 18S rRNA through the processing of pre-rRNAs at sites A0, A1 and A2, and the normal formation of 25S and 5.8S rRNAs through the processing of pre-rRNAs at sites C1 and C2. | 0.889 |
| PGUG_04793 | STS1 | A5DNE2 | A5DEJ2 | Ribosomal_L30 domain-containing protein. | Tethering factor for nuclear proteasome STS1; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins (By similarity). | 0.556 |
| PGUG_05238 | STS1 | A5DPN7 | A5DEJ2 | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | Tethering factor for nuclear proteasome STS1; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins (By similarity). | 0.639 |
| PGUG_05501 | IPI3 | A5DQF0 | A5DNK9 | Brix domain-containing protein. | Pre-rRNA-processing protein IPI3; Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA. | 0.408 |
| PGUG_05501 | PGUG_01184 | A5DQF0 | A5DD29 | Brix domain-containing protein. | Fcf2 domain-containing protein. | 0.487 |
| PGUG_05501 | PGUG_04793 | A5DQF0 | A5DNE2 | Brix domain-containing protein. | Ribosomal_L30 domain-containing protein. | 0.873 |
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