PGUG_04822 protein (Meyerozyma guilliermondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PGUG_04822

Uncharacterized protein. (1305 aa)

Predicted Functional Partners:

PGUG_04820

0.942

PGUG_00805

0.667

ALA1

0.663

PGUG_00406

0.556

PGUG_04333

0.458

PGUG_04064

0.450

PGUG_03491

0.436

PGUG_01012

0.414

Your Current Organism:

Meyerozyma guilliermondii

NCBI taxonomy Id: 294746
Other names: M. guilliermondii ATCC 6260, Meyerozyma guilliermondii ATCC 6260, Pichia guilliermondii ATCC 6260

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALA1	PGUG_00406	A5DAB8	A5DAV1	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.768
ALA1	PGUG_00805	A5DAB8	A5DC00	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.	Uncharacterized protein.	0.863
ALA1	PGUG_03491	A5DAB8	A5DJP0	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.	UBA domain-containing protein.	0.407
ALA1	PGUG_04820	A5DAB8	A5DNG9	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.	Uncharacterized protein.	0.663
ALA1	PGUG_04822	A5DAB8	A5DNH1	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.	Uncharacterized protein.	0.663
PGUG_00406	ALA1	A5DAV1	A5DAB8	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.	0.768
PGUG_00406	PGUG_00805	A5DAV1	A5DC00	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein.	0.528
PGUG_00406	PGUG_04820	A5DAV1	A5DNG9	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein.	0.556
PGUG_00406	PGUG_04822	A5DAV1	A5DNH1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein.	0.556
PGUG_00805	ALA1	A5DC00	A5DAB8	Uncharacterized protein.	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.	0.863
PGUG_00805	PGUG_00406	A5DC00	A5DAV1	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.528
PGUG_00805	PGUG_04820	A5DC00	A5DNG9	Uncharacterized protein.	Uncharacterized protein.	0.667
PGUG_00805	PGUG_04822	A5DC00	A5DNH1	Uncharacterized protein.	Uncharacterized protein.	0.667
PGUG_01012	PGUG_03491	A5DCK7	A5DJP0	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	UBA domain-containing protein.	0.569
PGUG_01012	PGUG_04820	A5DCK7	A5DNG9	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.414
PGUG_01012	PGUG_04822	A5DCK7	A5DNH1	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.414
PGUG_03491	ALA1	A5DJP0	A5DAB8	UBA domain-containing protein.	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.	0.407
PGUG_03491	PGUG_01012	A5DJP0	A5DCK7	UBA domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.569
PGUG_03491	PGUG_04820	A5DJP0	A5DNG9	UBA domain-containing protein.	Uncharacterized protein.	0.436
PGUG_03491	PGUG_04822	A5DJP0	A5DNH1	UBA domain-containing protein.	Uncharacterized protein.	0.436