Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CTRG_00308 | CTRG_00596 | C5M2L9 | C5M3F7 | BSD domain-containing protein. | HMG box domain-containing protein. | 0.732 |
CTRG_00308 | CTRG_00802 | C5M2L9 | C5M413 | BSD domain-containing protein. | DNA repair helicase RAD25. | 0.999 |
CTRG_00308 | CTRG_01168 | C5M2L9 | C5M5N8 | BSD domain-containing protein. | DNA-directed RNA polymerase I 49 kDa polypeptide. | 0.645 |
CTRG_00308 | CTRG_01241 | C5M2L9 | C5M5W0 | BSD domain-containing protein. | General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. | 0.999 |
CTRG_00308 | CTRG_02929 | C5M2L9 | C5M957 | BSD domain-containing protein. | Uncharacterized protein. | 0.999 |
CTRG_00308 | CTRG_04956 | C5M2L9 | C5MFW3 | BSD domain-containing protein. | DNA repair helicase RAD3. | 0.999 |
CTRG_00449 | CTRG_00596 | C5M310 | C5M3F7 | Histone H2A; Belongs to the histone H2A family. | HMG box domain-containing protein. | 0.639 |
CTRG_00449 | CTRG_01515 | C5M310 | C5M6N4 | Histone H2A; Belongs to the histone H2A family. | Uncharacterized protein. | 0.530 |
CTRG_00449 | CTRG_04468 | C5M310 | C5MEH5 | Histone H2A; Belongs to the histone H2A family. | Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. | 0.531 |
CTRG_00596 | CTRG_00308 | C5M3F7 | C5M2L9 | HMG box domain-containing protein. | BSD domain-containing protein. | 0.732 |
CTRG_00596 | CTRG_00449 | C5M3F7 | C5M310 | HMG box domain-containing protein. | Histone H2A; Belongs to the histone H2A family. | 0.639 |
CTRG_00596 | CTRG_00802 | C5M3F7 | C5M413 | HMG box domain-containing protein. | DNA repair helicase RAD25. | 0.720 |
CTRG_00596 | CTRG_01168 | C5M3F7 | C5M5N8 | HMG box domain-containing protein. | DNA-directed RNA polymerase I 49 kDa polypeptide. | 0.689 |
CTRG_00596 | CTRG_01241 | C5M3F7 | C5M5W0 | HMG box domain-containing protein. | General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. | 0.672 |
CTRG_00596 | CTRG_01515 | C5M3F7 | C5M6N4 | HMG box domain-containing protein. | Uncharacterized protein. | 0.661 |
CTRG_00596 | CTRG_02929 | C5M3F7 | C5M957 | HMG box domain-containing protein. | Uncharacterized protein. | 0.723 |
CTRG_00596 | CTRG_04468 | C5M3F7 | C5MEH5 | HMG box domain-containing protein. | Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. | 0.776 |
CTRG_00596 | CTRG_04956 | C5M3F7 | C5MFW3 | HMG box domain-containing protein. | DNA repair helicase RAD3. | 0.640 |
CTRG_00596 | CTRG_05995 | C5M3F7 | C5MIV2 | HMG box domain-containing protein. | Uncharacterized protein. | 0.851 |
CTRG_00802 | CTRG_00308 | C5M413 | C5M2L9 | DNA repair helicase RAD25. | BSD domain-containing protein. | 0.999 |
page 1 of 3