STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRG_00596HMG box domain-containing protein. (225 aa)    
Predicted Functional Partners:
CTRG_05995
Uncharacterized protein.
    
 
 0.851
CTRG_04468
Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.
    
 0.776
CTRG_00308
BSD domain-containing protein.
    
 0.732
CTRG_02929
Uncharacterized protein.
    
 0.723
CTRG_00802
DNA repair helicase RAD25.
   
 0.720
CTRG_01168
DNA-directed RNA polymerase I 49 kDa polypeptide.
    
 0.689
CTRG_01241
General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.
    
 0.672
CTRG_01515
Uncharacterized protein.
   
 0.661
CTRG_04956
DNA repair helicase RAD3.
    
 0.640
CTRG_00449
Histone H2A; Belongs to the histone H2A family.
   
 0.639
Your Current Organism:
Candida tropicalis
NCBI taxonomy Id: 294747
Other names: C. tropicalis MYA-3404, Candida tropicalis MYA-3404, Candida tropicalis T1
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