STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CNBG_2335Zinc finger protein. (299 aa)    
Predicted Functional Partners:
CNBG_3982
Cell cycle arrest protein BUB3.
   
 
 0.960
CNBG_2618
Splicing factor 3B subunit 1.
   
    0.620
CNBG_0673
Splicing factor 3A subunit 2.
   
 
 0.558
CNBG_3635
RNA-binding protein with serine-rich domain 1.
   
 
 0.513
CNBG_0418
U1 small nuclear ribonucleoprotein 70kDa.
   
   0.489
CNBG_2401
BUB protein kinase.
    
 
 0.484
CNBG_2529
Cleavage stimulation factor subunit 2.
   
   0.479
CNBG_5680
mRNA binding protein.
   
   0.475
CNBG_9432
Polyadenylation factor subunit 2.
   
 
 0.469
CNBG_3757
Cytoplasmic protein.
   
   0.467
Your Current Organism:
Cryptococcus gattii
NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265
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