STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CNBG_4503Ubiquitin-conjugation factor E4 B. (1143 aa)    
Predicted Functional Partners:
CNBG_0817
E3 ubiquitin-protein ligase TRIP12.
   
 0.994
CNBG_9105
UV excision repair protein Rad23.
   
 0.978
CNBG_5683
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
   
 
 0.972
CNBG_4715
Ubiquitin fusion degradation protein 1.
    
 
 0.971
CNBG_4648
Ubiquitin-conjugating enzyme family protein.
   
 0.970
CNBG_3271
Nuclear protein localization protein 4.
    
 
 0.965
CNBG_5032
Ubiquitin thioesterase OTU1.
    
 
 0.964
CNBG_0004
Ubiquilin.
   
 0.954
CNBG_1940
UBX domain-containing protein 1.
    
 
 0.943
CNBG_1843
Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.933
Your Current Organism:
Cryptococcus gattii
NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265
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