STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CNBG_5015CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (358 aa)    
Predicted Functional Partners:
CNBG_2645
Cyclin H; Belongs to the cyclin family.
    
 0.999
CNBG_9165
CDK-activating kinase assembly factor MAT1.
   
 0.999
CNBG_4745
Transcription initiation factor TFIIH subunit 3.
    
 0.996
CNBG_1760
Transcription initiation factor TFIIB.
   
 0.994
CNBG_5697
Transcription initiation factor TFIIE subunit beta.
   
 0.994
CNBG_3424
Transcription initiation factor TFIIE subunit alpha.
    
 0.994
CNBG_4415
TATA-box-binding protein.
   
 0.992
CNBG_1348
DNA excision repair protein ERCC-2.
    
 0.990
CNBG_5310
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.989
CNBG_2668
General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.
   
 0.982
Your Current Organism:
Cryptococcus gattii
NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265
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