STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CNBG_5279RNA-binding protein 39. (615 aa)    
Predicted Functional Partners:
CNBG_3119
Pre-mRNA-splicing factor CEF1.
   
 
 0.959
CNBG_3668
Uncharacterized protein.
   
 0.929
CNBG_1693
Splicing factor U2AF 65 kDa subunit.
   
 
0.862
CNBG_2618
Splicing factor 3B subunit 1.
   
 
 0.832
CNBG_6179
Serine/arginine repetitive matrix protein 1.
   
 0.813
CNBG_9571
CMGC/SRPK protein kinase.
    
 
 0.809
CNBG_2598
Small nuclear ribonucleoprotein.
   
 0.808
CNBG_2411
DNA damage-binding protein 1.
    
 
 0.794
CNBG_4293
Uncharacterized protein.
   
 0.778
CNBG_2253
Pre-mRNA-processing factor 17.
    
 0.768
Your Current Organism:
Cryptococcus gattii
NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.