STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CNBG_9425Cupin_2 domain-containing protein. (255 aa)    
Predicted Functional Partners:
CNBG_9175
Acetyl-CoA carboxylase/biotin carboxylase.
   
 0.642
CNBG_2706
Iron-sulfur clusters transporter ATM1, mitochondrial.
    
 0.614
CNBG_9422
Ubiquitin carboxyl-terminal hydrolase 10; Belongs to the peptidase C19 family.
    
  0.606
CNBG_0093
AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.
    
  0.585
CNBG_4257
ABC transporter.
    
 0.574
CNBG_5378
Cytoskeleton assembly control protein.
    
 0.555
BNA4
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.
   
 
 0.552
CNBG_2429
ENTH domain-containing protein.
    
 0.551
CNBG_1896
Formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.
    
  0.546
CNBG_0548
Aromatic-L-amino-acid decarboxylase.
     
 0.537
Your Current Organism:
Cryptococcus gattii
NCBI taxonomy Id: 294750
Other names: C. gattii VGII R265, Cryptococcus bacillisporus R265, Cryptococcus bacillisporus VGII R265, Cryptococcus deuterogattii R265, Cryptococcus gattii R265, Cryptococcus gattii VGII R265, Cryptococcus neoformans R265
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