STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytMPutative peptidase. (438 aa)    
Predicted Functional Partners:
znuA
High-affinity zinc transporter periplasmic protein.
 
  
 0.889
amiB
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.699
ompF
Putative outer membrane porin F protein.
  
   
 0.694
msbB
Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A.
 
    0.684
ompC2
Outer membrane protein C2; Belongs to the Gram-negative porin family.
  
   
 0.682
yhcB
Cytochrome d ubiquinol oxidase subunit III.
  
     0.673
ompD
Outer membrane porin protein.
  
   
 0.672
rseP
Zinc metallopeptidase RseP.
 
  
 0.653
b4372
DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.647
meoA
Outer membrane porin protein C; Belongs to the Gram-negative porin family.
  
   
 0.638
Your Current Organism:
Yersinia frederiksenii
NCBI taxonomy Id: 29484
Other names: ATCC 33641, CCUG 11293, CIP 80.29, DSM 18490, NCTC 11470, Y. frederiksenii, strain 6175
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.