STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmlR_1LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family. (314 aa)    
Predicted Functional Partners:
lysR1_1
Transcriptional regulator.
  
     0.585
fabG_1
Putative short chain dehydrogenease.
 
     0.570
catM
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.549
hexA_1
LysR family transcriptional regulator.
  
     0.540
oxyR
DNA-binding transcriptional regulator OxyR; Belongs to the LysR transcriptional regulatory family.
  
     0.536
benM
DNA-binding transcriptional activator XapR; Belongs to the LysR transcriptional regulatory family.
  
     0.515
cbl
Transcriptional regulator CysB-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.503
gltC_4
Transcriptional regulator HdfR; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.475
gltR
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.440
hexA_2
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.440
Your Current Organism:
Yersinia frederiksenii
NCBI taxonomy Id: 29484
Other names: ATCC 33641, CCUG 11293, CIP 80.29, DSM 18490, NCTC 11470, Y. frederiksenii, strain 6175
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.