Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CNF60476.1 | hmsT | ERS008455_00651 | ERS008455_00650 | Uncharacterised protein. | HmsT protein. | 0.580 |
barA | cdgR | ERS008455_00847 | ERS008455_00337 | Hybrid sensory histidine kinase BarA. | Cyclic diguanylate phosphodiesterase domain-containing protein. | 0.606 |
barA | dosP | ERS008455_00847 | ERS008455_00380 | Hybrid sensory histidine kinase BarA. | Putative phosphodiesterase. | 0.884 |
barA | gmr_3 | ERS008455_00847 | ERS008455_03265 | Hybrid sensory histidine kinase BarA. | Sensory box-containing diguanylate cyclase. | 0.856 |
barA | hmsT | ERS008455_00847 | ERS008455_00650 | Hybrid sensory histidine kinase BarA. | HmsT protein. | 0.639 |
barA | ycgG_1 | ERS008455_00847 | ERS008455_01247 | Hybrid sensory histidine kinase BarA. | Rtn protein. | 0.683 |
barA | ycgG_2 | ERS008455_00847 | ERS008455_03028 | Hybrid sensory histidine kinase BarA. | Rtn protein. | 0.688 |
barA | yhdA | ERS008455_00847 | ERS008455_02585 | Hybrid sensory histidine kinase BarA. | Regulatory protein CsrD. | 0.931 |
barA | yhjH_2 | ERS008455_00847 | ERS008455_03964 | Hybrid sensory histidine kinase BarA. | EAL domain-containing protein. | 0.606 |
barA | yhjK | ERS008455_00847 | ERS008455_02715 | Hybrid sensory histidine kinase BarA. | Sensory box/GGDEF family protein. | 0.691 |
cdgR | barA | ERS008455_00337 | ERS008455_00847 | Cyclic diguanylate phosphodiesterase domain-containing protein. | Hybrid sensory histidine kinase BarA. | 0.606 |
cdgR | dosP | ERS008455_00337 | ERS008455_00380 | Cyclic diguanylate phosphodiesterase domain-containing protein. | Putative phosphodiesterase. | 0.823 |
cdgR | gmr_3 | ERS008455_00337 | ERS008455_03265 | Cyclic diguanylate phosphodiesterase domain-containing protein. | Sensory box-containing diguanylate cyclase. | 0.775 |
cdgR | hmsT | ERS008455_00337 | ERS008455_00650 | Cyclic diguanylate phosphodiesterase domain-containing protein. | HmsT protein. | 0.616 |
cdgR | ycgG_1 | ERS008455_00337 | ERS008455_01247 | Cyclic diguanylate phosphodiesterase domain-containing protein. | Rtn protein. | 0.570 |
cdgR | ycgG_2 | ERS008455_00337 | ERS008455_03028 | Cyclic diguanylate phosphodiesterase domain-containing protein. | Rtn protein. | 0.666 |
cdgR | yhdA | ERS008455_00337 | ERS008455_02585 | Cyclic diguanylate phosphodiesterase domain-containing protein. | Regulatory protein CsrD. | 0.726 |
cdgR | yhjK | ERS008455_00337 | ERS008455_02715 | Cyclic diguanylate phosphodiesterase domain-containing protein. | Sensory box/GGDEF family protein. | 0.641 |
dosP | barA | ERS008455_00380 | ERS008455_00847 | Putative phosphodiesterase. | Hybrid sensory histidine kinase BarA. | 0.884 |
dosP | cdgR | ERS008455_00380 | ERS008455_00337 | Putative phosphodiesterase. | Cyclic diguanylate phosphodiesterase domain-containing protein. | 0.823 |
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