Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dppB_1Putative permease. (346 aa)    
Predicted Functional Partners:
ddpC_1
Putative permease.
 
 
 0.974
gsiA_1
Putative ABC transporter transporter%2C ATP-binding protein.
 
 
 0.972
gsiA_2
ABC transporter ATP-binding protein.
 
    0.942
gsiB
Oligo-dipeptide/nickel ABC transporter substrate-binding protein.
 
   0.936
dppC
Dipeptide transporter.
 
 
 0.918
gsiA_5
Putative ABC transporter transporter%2C ATP-binding protein.
 
 
 0.894
ddpC_2
Putative permease.
 
 
 0.890
gsiD
Putative permease.
 
 
 0.889
dppD_1
Dipeptide transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.881
ddpC_3
Binding-protein-dependent transport protein.
 
   0.879
Your Current Organism:
Yersinia frederiksenii
NCBI taxonomy Id: 29484
Other names: ATCC 33641, CCUG 11293, CIP 80.29, DSM 18490, NCTC 11470, Y. frederiksenii, strain 6175
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