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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sorEL-sorbose 1-phosphate reductase. (416 aa)    
Predicted Functional Partners:
sorC
Transcriptional regulatory protein.
 
   
 0.780
gutD
Sorbitol-6-phosphate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.701
sorA
Sorbose-specific PTS uptake system component.
 
    0.631
sorM
Sorbose-specific PTS uptake system%2C component.
  
    0.590
sorF
Sorbose-specific PTS uptake system component.
  
  
 0.587
gutA
PTS system glucitol/sorbitol-specific transporter subunit IIc2.
 
     0.527
mtlA
PTS system mannitol-specific transporter subunit IICBA.
 
   
 0.507
gutB
PTS system glucitol/sorbitol-specific transporter subunit IIA.
 
     0.491
nifJ
Putative pyruvate-flavodoxin oxidoreductase.
     
 0.480
gutE
PTS system%2C glucitol/sorbitol-specific transporter subunit IIBC.
 
     0.451
Your Current Organism:
Yersinia frederiksenii
NCBI taxonomy Id: 29484
Other names: ATCC 33641, CCUG 11293, CIP 80.29, DSM 18490, NCTC 11470, Y. frederiksenii, strain 6175
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