STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yenIN-acylhomoserine lactone synthase. (214 aa)    
Predicted Functional Partners:
lasR
LuxR family transcriptional regulator.
 
   
 0.752
yenR
Quorum-sensing transcriptional activator.
 
   
 0.717
CNG29686.1
Opacity-associated protein A.
  
     0.549
barA
Hybrid sensory histidine kinase BarA.
  
   
 0.538
yhcP_2
P-hydroxybenzoic acid efflux subunit AaeB; Forms an efflux pump with AaeA. Could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell; Belongs to the aromatic acid exporter ArAE (TC 2.A.85) family.
  
     0.517
mzrA
Protein YqjB; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR.
  
     0.494
tomB
Putative cytoplasmic protein.
  
     0.482
damX
damx%2C an inner membrane protein involved in bile resistance; Non-essential cell division protein.
  
     0.481
yciC
Membrane protein YciC%2C linked to IspA.
  
     0.480
CNF96262.1
Putative fimbrial biogenesis protein.
  
     0.477
Your Current Organism:
Yersinia frederiksenii
NCBI taxonomy Id: 29484
Other names: ATCC 33641, CCUG 11293, CIP 80.29, DSM 18490, NCTC 11470, Y. frederiksenii, strain 6175
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.