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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hisPHistidine/lysine/arginine/ornithine transporter subunit. (279 aa)    
Predicted Functional Partners:
hisQ_2
Histidine transport system permease HisQ.
 
 
 0.996
hisM_2
Histidine transport system permease HisM.
 
 0.993
hisJ
Histidine-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.988
hisM_1
Polar amino acid ABC transporter%2C inner membrane subunit.
 
 0.974
argT
Amino acid-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.953
hisQ_1
Amino acid transport system permease.
  
 0.856
artQ
Arginine transporter permease subunit ArtQ.
  
 0.848
artM_3
Arginine transporter permease subunit ArtM.
  
 0.827
yecS_1
Putative amino-acid ABC transporter permease.
    0.801
glnP
Glutamine ABC transporter permease.
    0.766
Your Current Organism:
Yersinia frederiksenii
NCBI taxonomy Id: 29484
Other names: ATCC 33641, CCUG 11293, CIP 80.29, DSM 18490, NCTC 11470, Y. frederiksenii, strain 6175
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