Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
faeE_1 | fimC_4 | ERS008455_01866 | ERS008455_01869 | Pili assembly chaperone. | Pili assembly chaperone. | 0.667 |
faeE_1 | fimD_4 | ERS008455_01866 | ERS008455_01868 | Pili assembly chaperone. | Fimbrial usher protein. | 0.960 |
faeE_1 | fim_1 | ERS008455_01866 | ERS008455_01870 | Pili assembly chaperone. | Fimbrial protein. | 0.888 |
faeE_1 | htrE_2 | ERS008455_01866 | ERS008455_03707 | Pili assembly chaperone. | Putative outer membrane usher protein. | 0.851 |
faeE_2 | fimC_8 | ERS008455_03709 | ERS008455_03706 | Putative pilus chaperone%2C PapD family. | Putative fimbrial chaperone. | 0.710 |
faeE_2 | fimD_4 | ERS008455_03709 | ERS008455_01868 | Putative pilus chaperone%2C PapD family. | Fimbrial usher protein. | 0.851 |
faeE_2 | fim_1 | ERS008455_03709 | ERS008455_01870 | Putative pilus chaperone%2C PapD family. | Fimbrial protein. | 0.820 |
faeE_2 | htrE_2 | ERS008455_03709 | ERS008455_03707 | Putative pilus chaperone%2C PapD family. | Putative outer membrane usher protein. | 0.957 |
fimC_4 | faeE_1 | ERS008455_01869 | ERS008455_01866 | Pili assembly chaperone. | Pili assembly chaperone. | 0.667 |
fimC_4 | fimD_4 | ERS008455_01869 | ERS008455_01868 | Pili assembly chaperone. | Fimbrial usher protein. | 0.944 |
fimC_4 | fim_1 | ERS008455_01869 | ERS008455_01870 | Pili assembly chaperone. | Fimbrial protein. | 0.912 |
fimC_4 | htrE_2 | ERS008455_01869 | ERS008455_03707 | Pili assembly chaperone. | Putative outer membrane usher protein. | 0.851 |
fimC_5 | fimC_6 | ERS008455_03000 | ERS008455_03003 | Putative chaperone protein. | Putative chaperone protein. | 0.627 |
fimC_5 | fimD_4 | ERS008455_03000 | ERS008455_01868 | Putative chaperone protein. | Fimbrial usher protein. | 0.851 |
fimC_5 | fim_1 | ERS008455_03000 | ERS008455_01870 | Putative chaperone protein. | Fimbrial protein. | 0.814 |
fimC_5 | htrE_2 | ERS008455_03000 | ERS008455_03707 | Putative chaperone protein. | Putative outer membrane usher protein. | 0.851 |
fimC_6 | fimC_5 | ERS008455_03003 | ERS008455_03000 | Putative chaperone protein. | Putative chaperone protein. | 0.627 |
fimC_6 | fimD_4 | ERS008455_03003 | ERS008455_01868 | Putative chaperone protein. | Fimbrial usher protein. | 0.851 |
fimC_6 | fim_1 | ERS008455_03003 | ERS008455_01870 | Putative chaperone protein. | Fimbrial protein. | 0.813 |
fimC_6 | htrE_2 | ERS008455_03003 | ERS008455_03707 | Putative chaperone protein. | Putative outer membrane usher protein. | 0.851 |
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