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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
basS_2Sensor protein BasS/PmrB. (360 aa)    
Predicted Functional Partners:
basR
DNA-binding transcriptional regulator BasR.
 
 
 0.985
phoP
DNA-binding transcriptional regulator PhoP.
 
 
 0.897
arcB
Aerobic respiration control sensor protein ArcB.
 
 
 0.873
mprA
DNA-binding transcriptional regulator BasR.
 
 
 0.837
rstA
DNA-binding transcriptional regulator RstA.
 
 
 0.834
dacB
D-alanyl-D-alanine carboxypeptidase.
 
    0.815
baeR
DNA-binding transcriptional regulator BaeR.
 
 
 0.814
cpxR1
DNA-binding transcriptional regulator CpxR.
 
 
 0.808
blrA
DNA-binding response regulator CreB.
 
 
 0.800
ompR_1
Putative two-component system response regulator.
 
 
 0.796
Your Current Organism:
Yersinia frederiksenii
NCBI taxonomy Id: 29484
Other names: ATCC 33641, CCUG 11293, CIP 80.29, DSM 18490, NCTC 11470, Y. frederiksenii, strain 6175
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