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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacBD-alanyl-D-alanine carboxypeptidase. (482 aa)    
Predicted Functional Partners:
dacA
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.910
basS_2
Sensor protein BasS/PmrB.
 
    0.815
basR
DNA-binding transcriptional regulator BasR.
  
    0.797
CNG00176.1
Sel1 repeat.
   
 
 0.668
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
  
 0.632
ompA1
Outer membrane protein OmpA; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
 
     0.619
CNF80966.1
L%2CD-transpeptidase YcbB.
  
  
 0.602
ycdY
Putative oxidoreductase component of anaerobic dehydrogenases%3B Functional role page for Chaperone protein TorD.
  
    0.544
CNG61259.1
Predicted membrane protein.
  
     0.515
trpR
Trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region.
  
     0.514
Your Current Organism:
Yersinia frederiksenii
NCBI taxonomy Id: 29484
Other names: ATCC 33641, CCUG 11293, CIP 80.29, DSM 18490, NCTC 11470, Y. frederiksenii, strain 6175
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