Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CNG53984.1 | dam_2 | ERS008455_03020 | ERS008455_03806 | DEAD/DEAH box helicase. | Putative adenine-specific modification methylase; Belongs to the MT-A70-like family. | 0.858 |
CNG53984.1 | dinG_1 | ERS008455_03020 | ERS008455_00058 | DEAD/DEAH box helicase. | DEAD box family helicase. | 0.963 |
CNG53984.1 | dinG_2 | ERS008455_03020 | ERS008455_01364 | DEAD/DEAH box helicase. | ATP-dependent DNA helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | 0.963 |
CNG53984.1 | hepA | ERS008455_03020 | ERS008455_00747 | DEAD/DEAH box helicase. | ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.947 |
CNG53984.1 | polA | ERS008455_03020 | ERS008455_02664 | DEAD/DEAH box helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.889 |
CNG53984.1 | rpoA | ERS008455_03020 | ERS008455_02968 | DEAD/DEAH box helicase. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.978 |
CNG53984.1 | rpoB | ERS008455_03020 | ERS008455_03934 | DEAD/DEAH box helicase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.978 |
CNG53984.1 | rpoC | ERS008455_03020 | ERS008455_03933 | DEAD/DEAH box helicase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.902 |
CNG53984.1 | rpoZ | ERS008455_03020 | ERS008455_02688 | DEAD/DEAH box helicase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.978 |
CNG53984.1 | ygdG | ERS008455_03020 | ERS008455_02073 | DEAD/DEAH box helicase. | Flap endonuclease-like protein; Has flap endonuclease activity. During DNA replication, flap endonucleases cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. | 0.849 |
dam_2 | CNG53984.1 | ERS008455_03806 | ERS008455_03020 | Putative adenine-specific modification methylase; Belongs to the MT-A70-like family. | DEAD/DEAH box helicase. | 0.858 |
dam_2 | rpoA | ERS008455_03806 | ERS008455_02968 | Putative adenine-specific modification methylase; Belongs to the MT-A70-like family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.508 |
dam_2 | rpoB | ERS008455_03806 | ERS008455_03934 | Putative adenine-specific modification methylase; Belongs to the MT-A70-like family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.551 |
dam_2 | rpoZ | ERS008455_03806 | ERS008455_02688 | Putative adenine-specific modification methylase; Belongs to the MT-A70-like family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.554 |
dinG_1 | CNG53984.1 | ERS008455_00058 | ERS008455_03020 | DEAD box family helicase. | DEAD/DEAH box helicase. | 0.963 |
dinG_1 | hepA | ERS008455_00058 | ERS008455_00747 | DEAD box family helicase. | ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.731 |
dinG_1 | polA | ERS008455_00058 | ERS008455_02664 | DEAD box family helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.778 |
dinG_1 | rpoA | ERS008455_00058 | ERS008455_02968 | DEAD box family helicase. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.933 |
dinG_1 | rpoB | ERS008455_00058 | ERS008455_03934 | DEAD box family helicase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.919 |
dinG_1 | rpoC | ERS008455_00058 | ERS008455_03933 | DEAD box family helicase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.784 |
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